Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR3733921/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  136,633,538
 Normal Paired: 129,876,680 (95.05%)
 Chimeric Paired: 4,916,421 (3.60%)
 Chimeric Ambiguous: 435,319 (0.32%)
 Unmapped: 1,405,118 (1.03%)
 Ligation Motif Present: 27,653 (0.02%)
Alignable (Normal+Chimeric Paired): 134,793,101 (98.65%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-08-29T03:17:12,655]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 35,229,090 (25.78%)
PCR Duplicates: 99,564,011 (72.87%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 36,090,840
Intra-fragment Reads: 19,682,577 (14.41% / 55.87%)
Below MAPQ Threshold: 2,876,198 (2.11% / 8.16%)
Hi-C Contacts: 12,670,315 (9.27% / 35.97%)
 Ligation Motif Present: 8,705  (0.01% / 0.02%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 26% - 24% - 24% - 25%
Inter-chromosomal: 1,980,009  (1.45% / 5.62%)
Intra-chromosomal: 10,690,306  (7.82% / 30.35%)
Short Range (<20Kb): 6,921,148  (5.07% / 19.65%)
Long Range (>20Kb): 3,769,149  (2.76% / 10.70%)